Enhanced Invasive Pneumococcal Disease Surveillance Working Group – Quarterly Surveillance Report

This quarterly report documents trends in notifications of IPD occurring in Australia in the first quarter of 2013 (1 January to 31 March 2013).

Page last updated: 14 October 2013

Christina Bareja and the Enhanced Invasive Pneumococcal Disease Surveillance Working Group

Invasive pneumococcal disease (IPD) is caused by the bacterium Streptococcus pneumoniae and results in illnesses such as pneumonia, bacteraemia and meningitis. There are currently 92 serotypes recognised worldwide and it has been a nationally notifiable disease in Australia since 2001. The Communicable Diseases Network Australia (CDNA) established the Enhanced Invasive Pneumococcal Disease Surveillance Working Group (EIPDSWG) in 2000 to assist in developing and implementing a nationally standardised approach to the enhanced surveillance of IPD in Australia. This quarterly report documents trends in notifications of IPD occurring in Australia in the first quarter of 2013 (1 January to 31 March 2013).

Notification data are collected by all Australian states and territories under jurisdictional public health legislation and are forwarded to the Commonwealth under the National Health Security Act 2007. Notifications are collated nationally in the National Notifiable Diseases Surveillance System (NNDSS). The data in this report are provisional and subject to change as laboratory results and additional case information become available. The data are analysed by diagnosis date and were extracted on 16 May 2013. Consideration of vaccination status of cases is outside the scope of this report. More detailed analyses will be available in national surveillance reports on vaccine preventable diseases published by the National Centre for Immunisation Research and Surveillance (NCIRS).

In Australia, pneumococcal vaccination is recommended as part of routine immunisation for children, the medically at risk and older Australians. The 7-valent pneumococcal conjugate vaccine (7vPCV) was added to the National Immunisation Program (NIP) schedule for Indigenous and medically at-risk children in 2001 and for all children up to 2 years of age in 2005. The 13-valent pneumococcal conjugate vaccine (13vPCV) replaced the 7vPCV in the childhood immunisation program from July 2011. The 23-valent pneumococcal polysaccharide vaccine (23vPPV) was added to the NIP schedule for Aboriginal and Torres Strait Islander peoples aged 50 years or older in 1999 and for non-Indigenous Australians aged 65 years or older from January 2005.

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Reporting period 1 January to 31 March 2013

There were 214 cases of IPD reported to the NNDSS in the first quarter of 2013 (Table 1), similar to the number of cases reported in the same period in 2012 (235 cases).

Overall, Aboriginal and Torres Strait Islander status was reported for 85% (n=181) of cases, ranging from 71% of cases reported by Victoria to 100% of cases reported by the Australian Capital Territory, the Northern Territory, South Australia and Western Australia. Of cases with reported Indigenous status, Aboriginal and Torres Strait peoples accounted for 18% (n=33) of all cases notified in the quarter (Table 1).

Serotype information was available for 90% (n=193) of all cases reported in the quarter, ranging from 69% of cases reported by South Australia to 100% of cases reported by the Australian Capital Territory, Queensland, Tasmania, Victoria and Western Australia. The organism from one case of IPD could not be typed as the isolate was deemed not viable by the reference laboratory. This case is categorised together with cases with unknown serotypes in this report.

Table 1: Notified cases of IPD, Australia, 1 January to 31 March 2013, by Indigenous status, serotype and state or territory

ACT

NSW

NT

Qld

SA

Tas

Vic

WA

Total QTR 1 2013

Total QTR 4 2012

Total QTR 1 2012

Year to date 2013

Indigenous status

Indigenous

0

3

12

5

2

0

2

9

33

-

-

-

Non-Indigenous

2

47

3

31

14

5

34

12

148

-

-

-

Not stated/ Unknown

0

15

0

2

0

1

15

0

33

-

-

-

Total

2

65

15

38

16

6

51

21

214

360

235

214

Indigenous status completeness* (%)

100

77

100

95

100

83

71

100

85

-

-

-

Serotype completeness (%)

100

77

93

100

69

100

100

100

90

-

-

-

* Indigenous status completeness is defined as the reporting of a known Indigenous status, excluding the reporting of not stated or unknown Indigenous status.
Serotype completeness is defined as the reporting of a valid S. pneumoniae serotype or reporting that no isolate was available as diagnosis was by PCR, that the isolate was not referred to the reference laboratory, was non-typable or not viable.

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IPD in children aged less than 5 years

In the first quarter of 2013, 10% (n=21) of notified cases were aged less than 5 years. This was almost half the number reported during the same period of 2012 (n=38) and the smallest number of cases reported in any quarter since national reporting began (Figure 1).

The majority (76%, 16/21) of cases aged less than 5 years reported in the first quarter of 2013 had serotype information. Of these, half (50%, 8/16) were reported with a serotype included in the 7vPCV or the 13vPCV.

Notification of cases aged less than 5 years with disease caused by the 6 additional serotypes targeted by the 13vPCV increased steadily over the period 2007 to 2011; particularly those caused by serotype 19A (Figure 2). However, notifications of this type have decreased since the fourth quarter of 2011, reflecting the introduction of the 13vPCV on the universal childhood immunisation program in mid-2011. In the first quarter of 2013, there were five cases aged less than 5 years with disease due to serotype 19A and two cases due to serotype 3. No cases in this age group were reported with disease caused by serotypes 1, 5, 6A or 7F.

Data table for Figure 1

Figure 1: Notified cases of IPD aged less than 5 years, Australia, 2002 to the first quarter of 2013, by serotypes*

Description for figure 1

Data table for Figure 2

Figure 2: Notified cases of IPD caused by serotypes targeted by the 13-valent pneumococcal conjugate vaccine (excluding those targeted by 7-valent pneumococcal conjugate vaccine), aged less than 5 years, Australia, 2002 to the first quarter of 2013

Figure 2: Notified cases of IPD caused by serotypes targeted by the 13-valent pneumococcal conjugate vaccine (excluding those targeted by 7-valent pneumococcal conjugate vaccine), aged less than 5 years, Australia, 2002 to the first quarter of 2013

Description for figure 2

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IPD in Indigenous Australians aged 50 years or older

In the first quarter of 2013, 4% (n=8) of notified cases were reported in Indigenous Australians aged 50 years or older. The number of cases notified in this group in the reporting period was similar to the number of cases notified in the previous quarter (n=6) (Figure 3). There were fewer notifications in the reporting period compared with the same quarter in the previous year (n=11).

All cases reported in this quarter were reported with serotype information. More than half (n=5) of the cases were reported with disease due to serotypes targeted by the 23vPCV, with the remaining reported with disease due to a non-vaccine serotype.

Data table for Figure 3

Figure 3: Notified cases of IPD in Indigenous Australians aged 50 years or older, Australia, 2002 to the first quarter of 2013, by serotype*

Figure 3: Notified cases of IPD in Indigenous Australians aged 50 years or older, Australia, 2002 to the first quarter of 2013, by serotype

Description for figure 3

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IPD in non-Indigenous Australians aged 65 years or older

In the first quarter of 2013, 29% (n=61) of notified cases were reported as non-Indigenous Australians aged 65 years or older. The number of cases notified was about one quarter of the number of cases notified at the seasonal peak in the third quarter of 2012 (n=209) (Figure 4). Slightly fewer notifications were reported in the quarter compared with the same quarter in the previous year (n=63).

Data table for Figure 4

Figure 4: Notified cases of IPD in non-Indigenous Australians aged 65 years or older, Australia, 2002 to the first quarter of 2013, by serotype*

Figure 4: Notified cases of IPD in non-Indigenous Australians aged 65 years or older, Australia, 2002 to the first quarter of 2013, by serotype

Description for figure 4

The majority (90%, 55/61) of cases reported in this quarter were reported with serotype information. Of these cases, more than one half (51%, 28/55) were reported with a serotype targeted by the 23vPPV. While the burden of disease in this age group has remained relatively stable, the profile of serotypes causing disease has changed over time. Disease due to serotypes targeted by the 7vPCV has reduced substantially in this age group likely due to herd immunity impacts from the childhood immunisation program.

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Acknowledgements

Report compiled by Christina Bareja on behalf of EIPDSWG.

EIPDSWG contributors to this report include (in alphabetical order): Christina Bareja (DoHA), David Coleman (Tas), Heather Cook (NT), Lucinda Franklin (Vic), Carolien Giele (WA), 
Lyn Gilbert (Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital), Robin Gilmour (NSW), Geoff Hogg (Microbiological Diagnostic Unit, University of Melbourne), Vicki Krause (NT), Rob Menzies (NCIRS), Shahin Oftadeh (Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital), Sue Reid (ACT), Stacey Rowe (Vic), Helen Smith (Queensland Health Forensic and Scientific Services), Janet Strachan (Microbiological Diagnostic Unit, University of Melbourne), Hannah Vogt (SA), Angela Wakefield (Qld).

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Author details

Christina Bareja1 EIPDSWG

  1. Vaccine Preventable Diseases Surveillance Section, Health Emergency Management Branch, Office of Health Protection, Department of Health, Canberra ACT

Corresponding author: Christina Bareja, Vaccine Preventable Diseases Surveillance Section, Office of Health Protection, Australian Government Department of Health, GPO Box 9484, MDP 14, Canberra, ACT 2601. Telephone: +61 2 6289 2729. Facsimile: +61 2 6289 1070. Email: christina.bareja@health.gov.au

Appendix - data for Figures

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Table 1: Notified cases of IPD, Australia, 1 January to 31 March 2013, by Indigenous status, serotype and state or territory*
  7vPCV serotypes 13vPCV, excluding 7vPCV serotypes Non-conjugate serotype Unknown serotype 7vPCV serotypes 13vPCV, excluding 7vPCV serotypes Non-conjugate serotype Unknown serotype (2) 13 valent, exc. 7-valent (3) Non-13-valent, typed (4) Unknown
2002 Q1 88 4 3 14 108 19 33 43 0 0 0
  Q2 164 21 8 30 223 49 63 64 0 0 0
  Q3 188 22 16 29 379 86 98 108 0 0 0
  Q4 135 4 6 32 217 40 52 76 0 0 0
2003 Q1 78 4 7 19 98 27 39 47 0 0 0
  Q2 148 22 18 21 207 33 55 57 0 0 0
  Q3 184 19 12 26 340 86 94 58 0 0 0
  Q4 108 8 10 8 222 52 74 45 0 0 0
2004 Q1 97 6 7 8 117 38 39 19 0 0 0
  Q2 185 17 9 15 243 51 69 34 0 0 0
  Q3 180 28 14 11 431 94 121 66 0 0 0
  Q4 91 12 10 10 205 48 46 42 0 0 0
2005 Q1 35 16 10 11 110 35 34 20 0 0 0
  Q2 68 11 7 5 212 64 51 36 0 0 0
  Q3 45 25 10 11 292 92 111 53 0 0 0
  Q4 20 12 11 5 133 52 57 37 0 0 0
2006 Q1 20 8 10 2 76 28 54 19 0 0 0
  Q2 26 20 7 3 168 67 97 25 0 0 0
  Q3 18 31 15 3 178 122 134 22 0 0 1
  Q4 6 16 9 2 94 87 62 18 0 0 0
2007 Q1 0 11 18 3 63 50 35 15 0 0 0
  Q2 13 37 23 3 96 83 107 21 0 0 0
  Q3 13 38 30 9 151 175 140 44 0 0 0
  Q4 3 30 12 4 42 74 99 26 0 0 0
2008 Q1 8 18 19 1 37 60 50 13 0 0 0
  Q2 7 37 23 9 73 122 125 36 0 0 0
  Q3 9 50 28 9 105 202 193 42 0 0 0
  Q4 6 28 19 6 56 104 115 18 0 0 0
2009 Q1 4 19 18 1 24 45 84 9 0 0 0
  Q2 3 50 16 8 59 125 120 21 0 0 0
  Q3 7 52 21 5 77 205 230 29 0 0 0
  Q4 4 25 10 8 37 94 131 14 0 0 1
2010 Q1 5 23 13 6 24 51 78 10 0 1 0
  Q2 3 42 20 10 37 138 148 24 0 0 0
  Q3 4 50 27 5 53 224 221 32 0 0 1
  Q4 1 47 26 4 27 136 125 26 1 0 0
2011 Q1 0 23 12 1 13 76 77 24 0 0 0
  Q2 4 68 30 11 34 204 173 25 0 0 0
  Q3 5 63 19 6 51 297 260 25 0 0 0
  Q4 3 28 11 4 29 142 136 32 0 0 0
2012 Q1 1 21 15 1 14 78 89 16 0 0 0
  Q2 3 23 17 7 32 191 187 40 0 0 0
  Q3 5 24 23 8 42 291 283 41 0 0 0
  Q4 1 11 22 7 22 111 142 44 0 0 0
  Q1 1 7 8 5 15 68 93 17 0 0 0
* Serotypes grouped according to targeted vaccines

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Figure 2: Notified cases of IPD caused by serotypes targeted by the 13-valent pneumococcal conjugate vaccine (excluding those targeted by 7-valent pneumococcal conjugate vaccine), aged less than 5 years, Australia, 2002 to the first quarter of 2013
    1 19a 3 5 6a 7f
2002 Q1 0 3 0 0 1 0
  Q2 2 7 3 0 6 3
  Q3 0 12 1 0 7 2
  Q4 0 3 0 0 1 0
2003 Q1 0 1 1 0 1 1
  Q2 1 8 3 0 10 0
  Q3 0 12 1 0 4 2
  Q4 0 2 2 0 3 1
2004 Q1 0 5 0 0 1 0
  Q2 0 10 2 0 5 0
  Q3 0 17 2 0 8 1
  Q4 0 6 1 0 5 0
2005 Q1 1 7 4 0 3 1
  Q2 0 8 1 0 1 1
  Q3 3 16 1 0 5 0
  Q4 2 6 1 0 2 1
2006 Q1 0 6 0 0 2 0
  Q2 1 12 2 0 3 2
  Q3 2 17 5 0 4 3
  Q4 0 9 3 0 3 1
2007 Q1 1 7 1 0 2 0
  Q2 1 27 4 0 3 2
  Q3 1 29 1 0 4 3
  Q4 1 24 3 0 0 2
2008 Q1 0 15 1 0 1 1
  Q2 1 29 3 0 2 2
  Q3 0 46 2 0 0 2
  Q4 0 28 0 0 0 0
2009 Q1 1 14 4 0 0 0
  Q2 0 45 0 0 2 3
  Q3 1 39 5 0 3 4
  Q4 1 22 0 0 1 1
2010 Q1 0 21 0 0 1 1
  Q2 4 32 1 0 1 4
  Q3 1 42 4 0 0 3
  Q4 9 29 3 0 1 5
2011 Q1 6 16 1 0 0 0
  Q2 6 48 7 0 0 7
  Q3 11 42 3 0 1 6
  Q4 5 19 2 0 0 2
2012 Q1 3 12 3 0 1 2
  Q2 4 13 1 0 0 5
  Q3 1 14 4 0 0 5
  Q4 0 6 4 0 0 1
  Q1 0 5 2 0 0 0

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Figure 3: Notified cases of IPD in Indigenous Australians aged 50 years or older, Australia, 2002 to the first quarter of 2013, by serotype*
  7vPCV serotypes 23vPPV, excluding 7vPCV serotypes Serotype 6A Non-vaccine serotype Unknown serotype
2002 Q1 0 1 0 0 1
  Q2 1 3 0 2 1
  Q3 3 1 0 1 2
  Q4 0 1 0 0 3
2003 Q1 2 0 0 0 0
  Q2 2 1 0 0 0
  Q3 2 1 0 1 1
  Q4 1 3 0 1 3
2004 Q1 0 1 0 0 0
  Q2 2 1 0 1 0
  Q3 3 5 0 7 1
  Q4 0 5 0 3 0
2005 Q1 0 1 0 2 0
  Q2 0 3 0 1 0
  Q3 2 4 0 4 2
  Q4 1 4 1 3 1
2006 Q1 0 1 0 2 0
  Q2 0 2 1 2 0
  Q3 1 5 0 3 1
  Q4 2 3 1 2 0
2007 Q1 0 0 0 2 1
  Q2 3 5 0 1 0
  Q3 2 7 0 2 1
  Q4 0 1 0 2 0
2008 Q1 1 5 0 1 1
  Q2 0 3 0 0 2
  Q3 1 8 0 6 0
  Q4 2 5 1 0 0
2009 Q1 0 3 0 1 1
  Q2 1 4 1 4 1
  Q3 2 5 0 4 0
  Q4 0 7 0 0 0
2010 Q1 0 1 0 4 0
  Q2 0 8 0 4 0
  Q3 0 9 0 6 0
  Q4 1 9 0 3 2
2011 Q1 1 5 0 0 2
  Q2 0 6 0 6 0
  Q3 2 15 0 11 0
  Q4 0 7 0 5 1
2012 Q1 1 5 0 5 0
  Q2 0 13 2 10 1
  Q3 2 12 0 7 0
  Q4 1 4 0 1 0
  Q1 1 4 0 3 0
* Serotypes grouped according to targeted vaccines
Note: In 1999 23vPPV immunisation commenced for Indigenous Australians aged 50 years and over.

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Figure 4: Notified cases of IPD in non-Indigenous Australians aged 65 years or older, Australia, 2002 to the first quarter of 2013, by serotype*
  7vPCV serotypes 23vPPV, excluding 7vPCV serotypes Serotype 6A Non-vaccine serotype Unknown serotype
2002 Q1 37 8   8 9
  Q2 83 25 8 11 20
  Q3 132 47 5 16 28
  Q4 76 22 4 6 20
2003 Q1 38 10 7 6 13
  Q2 66 17 3 9 21
  Q3 89 39 6 10 15
  Q4 70 22 5 8 12
2004 Q1 47 15 7 3 5
  Q2 85 25 6 8 11
  Q3 157 41 8 13 19
  Q4 72 15 9 4 15
2005 Q1 33 16 2 5 8
  Q2 83 28 5 5 12
  Q3 117 36 10 14 15
  Q4 51 22 5 7 14
2006 Q1 33 22 2 7 5
  Q2 66 42 8 14 9
  Q3 70 60 10 25 9
  Q4 30 26 8 16 10
2007 Q1 28 17 3 4 6
  Q2 38 48 9 18 7
  Q3 63 66 6 30 6
  Q4 16 35 4 28 9
2008 Q1 11 20 4 8 3
  Q2 28 54 8 30 9
  Q3 40 95 14 45 14
  Q4 22 56 6 25 9
2009 Q1 11 24 2 14 4
  Q2 12 50 4 23 5
  Q3 28 82 7 46 6
  Q4 14 45 1 39 7
2010 Q1 8 22   13 2
  Q2 10 59 6 37 5
  Q3 19 87 1 54 10
  Q4 10 44 5 31 9
2011 Q1 3 22 2 14 8
  Q2 11 63   40 7
  Q3 17 112 3 59 7
  Q4 12 58   41 8
2012 Q1 7 31   19 6
  Q2 14 82 2 54 9
  Q3 11 112 3 69 14
  Q4 8 48 1 43 17
  Q1 5 23 1 26 6
* Serotypes grouped according to targeted vaccines

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Communicable Diseases Intelligence